# Bioresearch Environment Check

> Verify the BioResearch Agent framework installation, Python/dependency versions, network access to biomedical databases, and output-directory permissions. Use when the user asks to validate the environment, troubleshoot a failed workflow run, or before running any analysis.

- **Type:** Skill
- **Install:** `agentstack add skill-alim430-bioresearch-agent-environment-check`
- **Verified:** Yes — security-reviewed for prompt injection and unsafe behavior
- **Seller:** [Alim430](https://agentstack.voostack.com/s/alim430)
- **Installs:** 0
- **Category:** [Agent Skills](https://agentstack.voostack.com/c/agent-skills)
- **Latest version:** 0.1.0
- **License:** MIT
- **Upstream author:** [Alim430](https://github.com/Alim430)
- **Source:** https://github.com/Alim430/bioresearch-agent/tree/main/skills/core/environment-check

## Install

```sh
agentstack add skill-alim430-bioresearch-agent-environment-check
```

Requires the [AgentStack CLI](https://agentstack.voostack.com/docs/cli). Works with Claude Code, Cursor, and any MCP-compatible agent.

## About

# BioResearch Agent — Environment & Reproducibility Check

## Capability

Validates that the framework is correctly installed and runnable, and that the reproducibility
preconditions (dependencies, network, writable outputs) are met. This is the prerequisite skill
before any literature / biomarker / causal workflow.

## Run

```bash
bioresearch doctor
```

The check validates:
- Python version (3.9+)
- Required dependencies (pandas, numpy, scipy, matplotlib, requests, networkx)
- Demo input files present
- Network connectivity to public biomedical APIs
- Output-directory write permissions

## Outputs

Console report only — no data files. Exit code `0` means ready; non-zero means a precondition
failed and should be fixed before running workflows.

## Note

Skills are thin invocation wrappers. This skill dispatches to the framework's `doctor` command;
it makes no network calls itself.

## Source & license

This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.

- **Author:** [Alim430](https://github.com/Alim430)
- **Source:** [Alim430/bioresearch-agent](https://github.com/Alim430/bioresearch-agent)
- **License:** MIT

Install and usage instructions live in the source repository linked above.

## Pricing

- **Free** — Free

## Security capabilities

Automated source analysis of v0.1.0 — what this tool can access:

- **Network access:** no
- **Filesystem access:** no
- **Shell / process execution:** no
- **Environment & secrets:** no
- **Dynamic code execution:** no

*"Yes" means the capability is present in the source — more access means more to trust, not that it is unsafe.*


## Versions

- **0.1.0** — security scan: passed — Imported from the upstream source.

## Links

- Listing page: https://agentstack.voostack.com/l/skill-alim430-bioresearch-agent-environment-check
- Seller: https://agentstack.voostack.com/s/alim430
- Browse the marketplace: https://agentstack.voostack.com/browse

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Listed on AgentStack — the marketplace for AI agent skills and MCP servers. Every listing is security-reviewed. Creators keep 70%.