# Bioresearch Literature Analysis

> Run a reproducible biomedical literature review via the BioResearch Agent literature workflow (PubMed retrieval, entity co-occurrence knowledge graph, structured review outline). Use when the user asks for a literature review, research-gap analysis, or a synthesized reading of PubMed papers on a biomedical topic.

- **Type:** Skill
- **Install:** `agentstack add skill-alim430-bioresearch-agent-literature-analysis`
- **Verified:** Yes — security-reviewed for prompt injection and unsafe behavior
- **Seller:** [Alim430](https://agentstack.voostack.com/s/alim430)
- **Installs:** 0
- **Category:** [Search](https://agentstack.voostack.com/c/search)
- **Latest version:** 0.1.0
- **License:** MIT
- **Upstream author:** [Alim430](https://github.com/Alim430)
- **Source:** https://github.com/Alim430/bioresearch-agent/tree/main/skills/biomedical/literature-analysis

## Install

```sh
agentstack add skill-alim430-bioresearch-agent-literature-analysis
```

Requires the [AgentStack CLI](https://agentstack.voostack.com/docs/cli). Works with Claude Code, Cursor, and any MCP-compatible agent.

## About

# BioResearch Agent — Literature Analysis Skill

## Capability

Performs a structured literature review over PubMed: retrieval → abstract parsing → biomedical
entity extraction → co-occurrence knowledge graph → research-gap identification → structured
outline. Produces data-derived artifacts instead of free-text summary only.

## Run

```bash
bioresearch run literature --query "microglia Alzheimer's disease"
```

## Outputs (in `outputs/literature/`)

- `lit_review_summary_table.csv` — extracted entities per paper
- `lit_review_knowledge_graph.png` — entity co-occurrence network
- `lit_review_knowledge_gaps.txt` — identified gaps
- `lit_review_outline.md` — structured review outline

## Note

This skill dispatches to the framework's `literature` workflow. It adds **no reasoning of its
own**; all computation runs in the workflow modules. Requires no LLM key — runs on public PubMed
APIs with synthetic fallback.

## Source & license

This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.

- **Author:** [Alim430](https://github.com/Alim430)
- **Source:** [Alim430/bioresearch-agent](https://github.com/Alim430/bioresearch-agent)
- **License:** MIT

Install and usage instructions live in the source repository linked above.

## Pricing

- **Free** — Free

## Security capabilities

Automated source analysis of v0.1.0 — what this tool can access:

- **Network access:** no
- **Filesystem access:** no
- **Shell / process execution:** no
- **Environment & secrets:** no
- **Dynamic code execution:** no

*"Yes" means the capability is present in the source — more access means more to trust, not that it is unsafe.*


## Versions

- **0.1.0** — security scan: passed — Imported from the upstream source.

## Links

- Listing page: https://agentstack.voostack.com/l/skill-alim430-bioresearch-agent-literature-analysis
- Seller: https://agentstack.voostack.com/s/alim430
- Browse the marketplace: https://agentstack.voostack.com/browse

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Listed on AgentStack — the marketplace for AI agent skills and MCP servers. Every listing is security-reviewed. Creators keep 70%.