# Bio Knowledge Databases

> 生物信息知识库与数据库范畴路由。用于文献、序列、公共测序、变异临床、通路互作、结构、化合物、药物靶点、单细胞图谱等数据库查询与证据整理任务，选择具体 database skill。

- **Type:** Skill
- **Install:** `agentstack add skill-onescience-ai-oneskills-knowledge-databases`
- **Verified:** Yes — security-reviewed for prompt injection and unsafe behavior
- **Seller:** [onescience-ai](https://agentstack.voostack.com/s/onescience-ai)
- **Installs:** 0
- **Category:** [Databases](https://agentstack.voostack.com/c/databases)
- **Latest version:** 0.1.0
- **License:** MIT
- **Upstream author:** [onescience-ai](https://github.com/onescience-ai)
- **Source:** https://github.com/onescience-ai/OneSkills/tree/master/skills/onescience-role/assets/bio_domain/knowledge-databases

## Install

```sh
agentstack add skill-onescience-ai-oneskills-knowledge-databases
```

Requires the [AgentStack CLI](https://agentstack.voostack.com/docs/cli). Works with Claude Code, Cursor, and any MCP-compatible agent.

## About

# 生信知识库与数据库范畴路由

当用户主要目标是查找、下载、汇总或交叉链接公共知识库信息时，使用本范畴。需要实际联网时，由执行层按权限处理；本层负责查询设计和交接。

## 具体 skill 路由

- PubMed、NCBI Gene/Protein/Nucleotide、SRA/GEO、UniProt、Ensembl：读取 `./literature-sequence-search/SKILL.md`
- ClinVar、gnomAD、dbSNP、COSMIC、cBioPortal、DepMap：读取 `./variant-clinical-databases/SKILL.md`
- GO、KEGG、Reactome、STRING、BRENDA、JASPAR、WikiPathways：读取 `./pathway-ppi-databases/SKILL.md`
- PDB、EMDB、AlphaFold DB、PubChem、ChEMBL、DrugBank、ZINC、OpenTargets：读取 `./structure-compound-databases/SKILL.md`
- cell atlas、cellxgene、reference mapping、ARCHS4：读取 `./single-cell-atlas-databases/SKILL.md`
- PRIDE、PeptideAtlas、MassIVE、HMDB、Metabolomics Workbench、RefMet、GNPS：读取 `./proteomics-metabolomics-databases/SKILL.md`
- ENCODE、ReMap、Cistrome、JASPAR motif、RegulomeDB、Roadmap epigenomics、UCSC tracks：读取 `./regulatory-annotation-databases/SKILL.md`

## 交接规则

输出时至少整理：

- `database_family`
- `query_terms`
- `identifier_type`
- `species_or_taxon`
- `release_or_date`
- `return_fields`
- `output_format`
- `execution_entry`

## Source & license

This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.

- **Author:** [onescience-ai](https://github.com/onescience-ai)
- **Source:** [onescience-ai/OneSkills](https://github.com/onescience-ai/OneSkills)
- **License:** MIT

Install and usage instructions live in the source repository linked above.

## Pricing

- **Free** — Free

## Security capabilities

Automated source analysis of v0.1.0 — what this tool can access:

- **Network access:** no
- **Filesystem access:** no
- **Shell / process execution:** no
- **Environment & secrets:** no
- **Dynamic code execution:** no

*"Yes" means the capability is present in the source — more access means more to trust, not that it is unsafe.*


## Versions

- **0.1.0** — security scan: passed — Imported from the upstream source.

## Links

- Listing page: https://agentstack.voostack.com/l/skill-onescience-ai-oneskills-knowledge-databases
- Seller: https://agentstack.voostack.com/s/onescience-ai
- Browse the marketplace: https://agentstack.voostack.com/browse

---
Listed on AgentStack — the marketplace for AI agent skills and MCP servers. Every listing is security-reviewed. Creators keep 70%.