Using Git Worktrees

Isolated Workspaces (Branches & Worktrees)

Work should never land directly on main. The default is a feature branch — that's what fits the usual loop (branch → fix → PR → merge → delete → next). A worktree is for when you genuinely need two checkouts at once: running parallel agents on independent tasks, comparing branches side by side, or keeping a long build/test going while you work elsewhere. If you don't need a second checkout, a branch is simpler — don't over-engineer it.

Say at the start: "Setting up an isolated workspace."

Branch (default)

git switch -c      # never start on main/master

That's it for most work. Skip the rest unless you actually need a second checkout.

Worktree (when you need a second checkout)

Step 0 — detect existing isolation

GIT_DIR=$(cd "$(git rev-parse --git-dir)" 2>/dev/null && pwd -P)
GIT_COMMON=$(cd "$(git rev-parse --git-common-dir)" 2>/dev/null && pwd -P)

GIT_DIR != GIT_COMMON is also true inside a submodule, so guard:

git rev-parse --show-superproject-working-tree 2>/dev/null  # path = submodule

• GIT_DIR != GIT_COMMON, not a submodule: already in a worktree — skip to

Setup. Don't nest another.

• Otherwise: normal checkout. If the user hasn't stated a preference, ask

before creating one.

Step 1 — create it

Native tool first. If the harness has a worktree tool (something like EnterWorktree, a /worktree command, or a --worktree flag), use it — it handles placement, branch, and cleanup, and the harness can track it. Using git worktree add when a native tool exists creates phantom state it can't see.

Git fallback (only if no native tool). Default dir .worktrees/ (else worktrees/; if both, .worktrees/). Project-local dirs MUST be git-ignored first or their contents get committed:

git check-ignore -q .worktrees || { echo ".worktrees/" >> .gitignore && git add .gitignore && git commit -m "chore: ignore worktrees"; }
git worktree add ".worktrees/" -b ""
cd ".worktrees/"

If git worktree add fails on a sandbox permission error, tell the user and work in place.

Setup

Auto-detect and run:

[ -f pnpm-lock.yaml ]   && pnpm install
[ -f package.json ]     && [ ! -f pnpm-lock.yaml ] && npm install
[ -f Cargo.toml ]       && cargo build
[ -f go.mod ]           && go mod download
[ -f pyproject.toml ]   && (poetry install || pip install -e .)

Verify a clean baseline

Run the test command (pnpm test / cargo test / go test ./...).

• Fail: report and ask whether to proceed — otherwise you can't tell new bugs

from pre-existing ones.

• Pass: report ready.

Never

• Start work on main/master.
• Spin up a worktree when a branch is all you need.
• Use git worktree add when a native worktree tool exists.
• Create a project-local worktree without verifying it's ignored.
• Skip the baseline test, or push through failures without asking.

Source & license

This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.

• Author: hdprajwal
• Source: hdprajwal/agent-skills
• License: MIT

Install and usage instructions live in the source repository linked above.