Install
$ agentstack add skill-heshamfs-materials-simulation-skills-convergence-study Open-source listing — not yet scanned by AgentStack. Follow the source repository for install instructions.
Security review
⚠ Flagged1 finding(s); flagged for manual review. · v0.1.0 How review works →
- • Prompt-injection patterns
- • Secret / credential exfiltration
- • Dangerous shell & filesystem operations
- • Untrusted network calls
- • Known-malicious package signatures
- high Dangerous shell/eval execution.
What it can access
- ✓ Network access No
- ✓ Filesystem access No
- ● Shell / process execution Used
- ✓ Environment & secrets No
- ● Dynamic code execution Used
From automated source analysis of v0.1.0. “Used” means the capability is present in the source — more access means more to trust, not that it’s unsafe.
About
Convergence Study
Goal
Provide script-driven convergence analysis for verifying that numerical solutions converge at the expected rate as the mesh or timestep is refined.
Requirements
- Python 3.10+
- No third-party packages — scripts use only the Python standard library (
math).
Inputs to Gather
| Input | Description | Example | |-------|-------------|---------| | Grid spacings | Sequence of mesh sizes (coarse to fine) | 0.4,0.2,0.1,0.05 | | Timestep sizes | Sequence of dt values | 0.04,0.02,0.01 | | Solution values | QoI at each refinement level | 1.16,1.04,1.01,1.0025 | | Expected order | Formal order of the numerical scheme | 2.0 | | Safety factor | GCI safety factor (1.25 default) | 1.25 |
Script Outputs (JSON Fields)
| Script | Key Outputs | |--------|-------------| | scripts/h_refinement.py | results.observed_orders, results.mean_order, results.richardson_extrapolated_value, results.convergence_assessment | | scripts/dt_refinement.py | Same as h_refinement but for temporal convergence | | scripts/richardson_extrapolation.py | results.extrapolated_value, results.error_estimate, results.observed_order | | scripts/gci_calculator.py | results.observed_order, results.gci_fine, results.gci_coarse, results.asymptotic_ratio, results.in_asymptotic_range, results.extrapolated_value, results.notes |
Workflow
- Run grid/timestep refinement study with at least 3 levels
- Compute observed convergence order with
h_refinement.pyordt_refinement.py - Compare observed order to expected order of the scheme
- Estimate discretization error via Richardson extrapolation
- Report GCI for formal solution verification using
gci_calculator.py - Document convergence results and any anomalies
Decision Guidance
Do you have 3+ refinement levels?
+-- YES --> Run h_refinement.py or dt_refinement.py
| +-- Observed order matches expected? --> Solution verified
| +-- Order too low? --> Check: pre-asymptotic, coding error, insufficient resolution
| +-- Order too high? --> Check: superconvergence or cancellation effects
+-- NO (only 2 levels) --> Use richardson_extrapolation.py with assumed order
(less reliable without order verification)
CLI Examples
# Spatial convergence with 4 grid levels
python3 scripts/h_refinement.py --spacings 0.4,0.2,0.1,0.05 --values 1.16,1.04,1.01,1.0025 --expected-order 2.0 --json
# Temporal convergence with 3 timestep levels
python3 scripts/dt_refinement.py --timesteps 0.04,0.02,0.01 --values 2.12,2.03,2.0075 --expected-order 2.0 --json
# Richardson extrapolation with assumed 2nd-order
python3 scripts/richardson_extrapolation.py --spacings 0.02,0.01 --values 1.0032,1.0008 --order 2.0 --json
# GCI for 3-mesh verification
python3 scripts/gci_calculator.py --spacings 0.04,0.02,0.01 --values 1.0128,1.0032,1.0008 --json
Error Handling
| Error | Cause | Resolution | |-------|-------|------------| | spacings and values must have the same length | Mismatched input arrays | Provide equal-length lists | | At least 2 refinement levels required | Too few data points | Add more refinement levels | | Exactly 3 refinement levels required | GCI needs 3 levels | Provide fine/medium/coarse | | Oscillatory convergence detected | Non-monotone convergence | Check mesh quality or scheme |
Interpretation Guidance
| Scenario | Meaning | Action | |----------|---------|--------| | Observed order matches expected | Strongest evidence of asymptotic range | Report GCI, extrapolate | | Observed order Asymptotic-ratio caveat (constant refinement ratios). When the refinement > ratios are equal (r21 == r32, the common case), the asymptotic ratio > AR = GCI_coarse / (r^p * GCI_fine) reduces algebraically to f1/f2. It then > only measures the relative gap between the two finest QoI values — not whether > the data follow the assumed power law — so an AR near 1.0 can give false > reassurance even when the observed order is far from expected. The > gci_calculator.py JSON emits a notes entry flagging this. For a real > asymptotic-range determination: > 1. Compare the observed order p to the scheme's theoretical/expected order — a > match is the meaningful evidence of being in the asymptotic range. > 2. For stronger verification, use 4+ systematically refined grids and check that > the observed order is consistent across successive grid triplets > (h_refinement.py reports one order per triplet plus mean_order).
Verification checklist
- [ ] Used >= 3 systematically refined grids/timesteps so
h_refinement.py/dt_refinement.pycan report aresults.mean_order; recorded the per-tripletresults.observed_orders(a single-pair Richardson run does not verify order). - [ ] Recorded
results.mean_orderand confirmedresults.convergence_assessmentreadsPASS(observed order within 10% of the scheme's expected order); aFAILorunknownmeans the result is not yet verified. - [ ] Confirmed
results.in_asymptotic_rangeistrueand that nonotesentry reports pre-asymptotic (>50% order variation), negative/non-positive order, or zero error differences before quoting any GCI or extrapolated value. - [ ] Checked refinement ratios
r21/r32fromgci_calculator.pyare >= 1.3 (round-off noise floor) and that noOscillatory convergence detectederror was raised. - [ ] Recorded
results.gci_fine(with the safety factor used: 1.25 for >= 3 grids with verified order, 3.0 for 2 grids with assumed order) as the reported discretization uncertainty, plusresults.extrapolated_valueas the best estimate. - [ ] For constant refinement ratios, did NOT treat
asymptotic_rationear 1.0 as proof of asymptotic range (it degenerates tof1/f2); confirmed the asymptotic range via observed-order-vs-expected and read thegci_calculator.pynotescaveat.
Common pitfalls & rationalizations
| Tempting shortcut | Why it's wrong / what to do | |-------------------|------------------------------| | "Two grids agree closely, so it's converged" | Two levels cannot estimate observed order. Run h_refinement.py/dt_refinement.py with >= 3 levels; a 2-grid Richardson run uses an assumed order and needs safety factor 3.0, not 1.25. | | "The asymptotic ratio is ~1.0, so we're in the asymptotic range" | With constant refinement ratios AR = GCI_coarse/(r^p*GCI_fine) reduces to f1/f2 and only measures the gap between the two finest QoI values. Verify the asymptotic range by comparing observed order to the expected order (and 4+ grid consistency). | | "GCI_fine is tiny, so the solution is grid-independent" | A near-zero GCI can also mean the QoI is insensitive to refinement or the differences are in round-off noise (ratios = 1.3 first. | | "Observed order is higher than expected, even better" | Order well above the formal order usually signals superconvergence or error cancellation, not extra accuracy. Treat it as a flag (convergence_assessment is FAIL when >10% off) and verify with more grid levels. | | "The script printed an extrapolated value, so use it" | When the observed order is non-positive the solution is diverging and h_refinement.py returns richardson_extrapolated_value = null with a diverging note. Do not quote an extrapolated value or GCI in that case. | | "Implicit/stable solver, so any timestep is fine for the study" | Temporal stability is not temporal accuracy. dt_refinement.py still needs >= 3 systematically reduced timesteps to recover the scheme's order; a too-coarse dt sequence stays pre-asymptotic. |
Security
Input Validation
- All numeric parameters (
spacings,timesteps,values,expected-order,order) are validated as finite positive numbers - Comma-separated value lists are length-matched (spacings and values must have equal length) and capped at 10,000 entries
- GCI calculator enforces exactly 3 refinement levels; Richardson extrapolation requires at least 2
- Safety factor is validated as a finite number not less than 1.0 (Roache uses Fs in {1.25, 3.0})
File Access
- Scripts read no external files; all inputs are provided via CLI arguments
- Scripts write only to stdout (JSON output); no files are created unless the agent explicitly uses the Write tool
Tool Restrictions
- Bash: Used to execute the four Python analysis scripts (
h_refinement.py,dt_refinement.py,richardson_extrapolation.py,gci_calculator.py) with explicit argument lists - Read: Used to inspect script source and reference documentation
Safety Measures
- No
eval(),exec(), or dynamic code generation - All subprocess calls use explicit argument lists (no
shell=True) - Scripts use only Python standard library (
mathmodule); no pickle loading or deserialization of untrusted data - Minimal tool surface (Bash and Read only) limits the agent's ability to modify the filesystem
References
references/convergence_theory.md- Formal convergence order, log-log analysis, asymptotic rangereferences/gci_guidelines.md- Roache's GCI method, ASME V&V 20, safety factors
Source & license
This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.
- Author: HeshamFS
- Source: HeshamFS/materials-simulation-skills
- License: Apache-2.0
Install and usage instructions live in the source repository linked above.
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Versions
- v0.1.0 Imported from the upstream source.