Lifelines Kaplan Meier Starter
A Claude skill from ma-compbio-lab/SkillFoundry.
Install
$ agentstack add skill-ma-compbio-lab-skillfoundry-lifelines-kaplan-meier-starter ✓ scanned · ✓ verified, works with Claude Code, Cursor, and more.
Security review
✓ PassedNo issues found. Passed automated security review. · v0.1.0 How review works →
- ✓ Prompt-injection patterns
- ✓ Secret / credential exfiltration
- ✓ Dangerous shell & filesystem operations
- ✓ Untrusted network calls
- ✓ Known-malicious package signatures
What it can access
- ✓ Network access No
- ✓ Filesystem access No
- ✓ Shell / process execution No
- ✓ Environment & secrets No
- ✓ Dynamic code execution No
From automated source analysis of v0.1.0. “Used” means the capability is present in the source — more access means more to trust, not that it’s unsafe.
Verified badge
Passed review? Show it. Paste this badge into your README, it links to the public security report.
Links to your public security report.[](https://agentstack.voostack.com/security/report/skill-ma-compbio-lab-skillfoundry-lifelines-kaplan-meier-starter) Reliability & compatibility
Declared compatibility
Compatibility is declared by the source manifest. End-to-end runtime verification is coming, see below.
We're building live execution health for every listing: tool-call success rate, median latency, uptime, and last-checked timestamps, measured, not self-reported. It isn't live yet, so we don't show numbers we can't stand behind.
How agent discovery & health will work →About
Lifelines Kaplan Meier Starter
Use this skill to run a deterministic Kaplan-Meier survival analysis over a toy cohort and summarize per-group survival curves.
What it does
- Loads a tiny cohort table with durations, events, and group labels.
- Fits one Kaplan-Meier curve per group with
lifelines. - Returns compact JSON with median survival times and survival probabilities at fixed time points.
- Optionally renders a PNG survival plot.
When to use it
- You need a local starter for survival-analysis workflows.
- You want a verified template for grouped time-to-event data in Python.
Example
slurm/envs/statistics/bin/python skills/clinical-biomedical-data-science/lifelines-kaplan-meier-starter/scripts/run_lifelines_kaplan_meier.py \
--input skills/clinical-biomedical-data-science/lifelines-kaplan-meier-starter/examples/toy_survival_cohort.tsv \
--summary-out scratch/lifelines/kaplan_meier_summary.json \
--png-out scratch/lifelines/kaplan_meier_plot.pngVerification
- Skill-local tests:
python3 -m unittest discover -s skills/clinical-biomedical-data-science/lifelines-kaplan-meier-starter/tests -p 'test_*.py' - Repository smoke:
python3 -m unittest tests.smoke.test_phase25_agent_and_clinical_skills -v
Source & license
This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.
- Author: ma-compbio-lab
- Source: ma-compbio-lab/SkillFoundry
- License: Apache-2.0
- Homepage: https://ma-compbio-lab.github.io/SkillFoundry/
Install and usage instructions live in the source repository linked above.
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Versions
- v0.1.0 Imported from the upstream source.