Humanizer
Use this skill for \"humanize this text\", \"remove AI tells\", \"make this less AI-sounding\", \"strip AI patterns\", \"de-AI my writing\", \"reduce AI-isms\", \"final natural-writing pass\", \"check for AI vocabulary\", \"em dash overuse\", \"rule of three overuse\", \"AI vocabulary\", \"signs of AI writing\", or when polishing prose (papers, grants, lit reviews, abstracts, cover letters, respo…
Bids Conversion
Use this skill for \"convert to BIDS\", \"BIDS format\", \"create BIDS dataset\", \"BIDS sidecar\", \"participants.tsv\", \"events.tsv\", \"EEG BIDS\", \"EMG BIDS\", \"MEG BIDS\", \"fMRI BIDS\", \"BIDS validator\", \"channel locations\", \"electrode positions\", \"BIDS metadata\", or when the user wants to convert neuroscience data to Brain Imaging Data Structure (BIDS) format or validate BIDS co…
Grant Figure Qa
Use this skill to review grant proposal figures for compliance, resolution, accessibility, and quality. Triggers on "check grant figures", "review proposal figures", "figure QA for grant", "NIH figure requirements", or when preparing a grant for submission.
Svg Primitives
Use when the user asks to build a programmatic SVG schematic in Python: flowcharts, boxes and arrows, auto-fit SVG text, mm-precise diagrams, edge-snapped arrows, tangent-correct curve arrowheads, orthogonal or Manhattan routing, deterministic z-order layers, labeled groups, bracket groupings, leader-line annotations, or strict Canvas.save validation for text overflow. Use figure-qa instead for a…
Scientific Figure
This skill should be used when the user asks to "create a figure", "make a scientific figure", "create a paper figure", "make a figure for my paper", "make a figure for my manuscript", "compose figure panels", "assemble figure panels", "combine figure panels", "make a multi-panel figure", "figure composition", "export a figure", "generate a PDF figure", "create a Nature-style figure", "make a jou…
Matlab Mcp Tools
An MCP to develop MATLAB pipelines section by section and read figures one dimension at a time
Svg Figure
This skill should be used when the user asks to "create an SVG figure", "make a schematic", "draw a diagram", "create a schematic diagram", "draw a flowchart", "draw a process flow", "draw a workflow", "draw a workflow diagram", "make an SVG schematic", "create a process diagram", "create a pipeline diagram", "create a block diagram", "draw a system diagram", "system architecture diagram", or wan…
Docker Packaging
This skill should be used when the user says \"create Dockerfile\", \"dockerize project\", \"Docker packaging\", \"container setup\", \"multi-stage build\", \"Docker Compose\", \"containerize application\", \"create docker-compose.yml\", \"create .dockerignore\", \"optimize Docker image\", or wants to containerize their project or create Docker configurations.
Ai Full Figure
This skill should be used when the user asks to "generate an AI figure", "make a full AI-generated figure", "make a poster figure", "make a presentation figure", "generate a figure with AI", "create a substrate image", "AI background for a figure", "create a poster background", or wants a pictorial substrate (brain scene, microscope setup, anatomical scene, lab apparatus) generated by AI and then…
Init Project
Use this skill for \"initialize project\", \"set up project\", \"scaffold project\", \"create AGENTS.md\", \"create CLAUDE.md\", \"set up rules\", \"create context directory\", \"vibe rules\", \"project templates\", \"init new project\", \"set up development structure\", \"create .rules\", \"create .context\", \"create ADR\", \"architecture decision records\", \"set up GitHub labels\", \"default…
Opencite
Use this skill for "search for papers", "find citations", "look up a DOI", "get BibTeX", "download PDF", "convert PDF to markdown", "find canonical papers", "convert identifiers", "batch download papers", "configure opencite", "literature review", "find related papers", "what papers cite this", "export references", "read this paper", or mentions of opencite, Semantic Scholar, OpenAlex, PubMed, ac…
Workflow Reference
This skill should be used when executing the epic-dev workflow, creating epic branches, managing sprint phases, working with git worktrees for phased feature development, or when the user mentions "epic dev", "epic-dev", "/epic-dev", "epic workflow", "sprint phases", "phased development", or "git worktree workflow".
Manuscript Writing
Use this skill for \"write a paper\", \"draft manuscript\", \"write introduction\", \"write methods section\", \"write results\", \"write discussion\", \"write abstract\", \"structure a paper\", \"academic writing\", \"write for journal\", or when the user wants to draft or revise sections of an academic manuscript.
Experiment Design
Use this skill for \"design experiment\", \"create PsychoPy experiment\", \"stimulus presentation\", \"experiment protocol\", \"timing validation\", \"trial structure\", \"block design\", \"event-related design\", \"PsychoPy builder\", \"create stimuli\", \"LSL markers\", \"Lab Streaming Layer\", \"event markers\", \"trigger codes\", or when the user wants to design or implement a neuroscience ex…
Ci Scaffolding
This skill should be used when the user says \"set up CI\", \"create GitHub Actions\", \"scaffold CI pipeline\", \"add CI/CD\", \"configure continuous integration\", \"create test workflow\", \"create release workflow\", \"add pre-commit hooks\", \"set up linting pipeline\", \"configure ruff in CI\", \"configure biome in CI\", \"add typo checking\", or wants to add, update, or customize CI/CD pip…
Security Audit
This skill should be used when the user says \"security audit\", \"check for vulnerabilities\", \"security review\", \"harden project\", \"dependency audit\", \"credential scan\", \"check for secrets\", \"scan for secrets\", \"OWASP review\", \"security checklist\", \"audit dependencies\", \"find vulnerabilities\", or wants to review their project for security issues, exposed credentials, or vuln…
Pr Review Toolkit
Review pull requests and recent code changes across specialized lenses: general code quality, tests, error handling and silent failures, comments and docs, type design, and simplification. Use when the user asks to review a PR, review recent changes, check tests, check error handling, check comments, analyze types, simplify/refine an implementation, run \"review-pr\", or before merging phase PRs…
Document Processing
This skill should be used when the user says \"process documents\", \"extract text from PDF\", \"OCR this document\", \"convert PDF to markdown\", \"extract emails from documents\", \"parse document\", \"document conversion\", \"batch OCR\", \"extract structured data from PDF\", \"read PDF\", \"extract tables from PDF\", \"convert Word document\", \"convert docx to markdown\", or wants to extract…
Figure Qa
Use this skill to QA a scientific figure for journal compliance, alignment, palette correctness, and label legibility. Triggers on "QA this figure", "check this figure", "review my figure", "is this figure paper-ready", "validate figure", or when invoked proactively after a figure-generation skill produces output (unless the caller passes no-qa). Dispatches on input type (SVG, raster PNG/JPG/TIFF…
Paper Review
Use this skill for \"review this paper\", \"review this manuscript\", \"peer review\", \"review my paper\", \"critique this manuscript\", \"review this submission\", \"give me feedback on my paper\", \"check my methods\", \"review my statistics\", \"review as a peer reviewer\", \"evaluate this manuscript\", \"review this PDF\", or mentions manuscript review, peer review, paper critique, or method…
Epic Dev
Execute the project epic development workflow for Codex. Use when the user asks for "epic dev", "epic-dev", "/epic-dev", "run the epic workflow", "create an epic", "resume the epic", "--resume", "--next-phase", "--finalize", phased feature delivery, sprint phases, GitHub sub-issues, or git worktrees for multi-phase implementation.
Presentation Builder
This skill should be used when the user asks to "create a presentation", "make slides", "build a slide deck", "create a talk", "make a keynote", "create a Reveal.js presentation", "generate presentation slides", "make a conference talk", "create a lecture", "build a poster presentation", "create presentation JSON", or mentions presentations, slides, slide decks, Reveal.js, talk preparation, confe…
Plot Styling
This skill should be used when the user asks to "plot data", "make a plot for a paper", "make a publication plot", "create a journal-quality plot", "matplotlib for a figure", "use seaborn", "use plotnine", "use ggplot in Python", "improve plot quality", "style my plot", "clean up my figure", "my matplotlib plot looks ugly", "apply journal style to existing script", "fix matplotlib defaults", "use…
Update Rules
This skill should be used when the user asks to \"update rules\", \"sync rules\", \"update AGENTS.md\", \"update CLAUDE.md\", \"refresh rules\", \"update project config\", \"sync templates\", \"update vibe rules\", \"check for rule updates\", \"update user rules\", \"update global config\", \"refresh AGENTS.md\", \"refresh CLAUDE.md\", \"sync .rules directory\", \"what's new in templates\", or wa…
Transparent Icons
This skill should be used when the user asks to "make an icon", "generate an icon", "create a scientific icon", "make a transparent icon", "make a minimal icon", "icon for a figure", "icon for a paper", "generate an icon set", "batch icons", "icon batch", "batch generate icons", or wants flat scientific icons (brain, neuron, DNA, EEG cap, etc.) in the Nature/Science journal style with transparent…
Manuscript Formatting
Use this skill for \"format manuscript\", \"prepare for submission\", \"journal formatting\", \"LaTeX template\", \"submission checklist\", \"format references\", \"BibTeX\", \"author guidelines\", \"page limits\", \"format for Nature\", \"format for IEEE\", or when the user wants to format a manuscript for journal submission.
Grant Review
This skill should be used when the user asks to "review a grant", "review my proposal", "score this grant", "evaluate my specific aims", "critique my research strategy", "review as an NIH reviewer", "review as an NSF panelist", "give me reviewer feedback", "check my grant proposal", "review my R01", "review my K99", "evaluate my CAREER proposal", "run a mock study section", "review my resubmissio…
Grant Writing
This skill should be used when the user asks to "write a grant proposal", "draft specific aims", "write a research strategy", "create an NIH proposal", "create an NSF proposal", "write a significance section", "write an innovation section", "write an approach section", "draft a DP2 essay", "write an R01", "write an R21", "write a K99", "write an R03", "write a K08", "write a K23", "write an F31",…
Lit Review
Use this skill for \"literature review workflow\", \"multi-phase lit review\", \"direction paper\", \"review paper protocol\", \"strand-based literature review\", \"citation-grounded review\", \"systematic lit review with paper cards\", \"build a lit review corpus\", \"lit review pipeline\", \"orchestrate a literature review\", \"research directions document\", \"write a literature review\", \"sy…