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SKILL verified MIT Self-run

Bio Literature Sequence Search

skill-onescience-ai-oneskills-literature-sequence-search · by onescience-ai

文献、序列和公共测序数据库查询 skill。用于 PubMed、NCBI Gene/Nucleotide/Protein/SRA/GEO、ENA、UniProt、Ensembl、BioProject、BioSample、accession 映射、FASTA/GenBank 下载和文献证据整理。

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Install

$ agentstack add skill-onescience-ai-oneskills-literature-sequence-search

✓ scanned · ✓ verified, works with Claude Code, Cursor, and more.

Security review

✓ Passed

No issues found. Passed automated security review. · v0.1.0 How review works →

  • ✓ Prompt-injection patterns
  • ✓ Secret / credential exfiltration
  • ✓ Dangerous shell & filesystem operations
  • ✓ Untrusted network calls
  • ✓ Known-malicious package signatures

What it can access

  • ✓ Network access No
  • ✓ Filesystem access No
  • ✓ Shell / process execution No
  • ✓ Environment & secrets No
  • ✓ Dynamic code execution No

From automated source analysis of v0.1.0. “Used” means the capability is present in the source — more access means more to trust, not that it’s unsafe.

View the full security report →

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Reliability & compatibility

✓ Security review passed
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● 2mo ago

Declared compatibility

Claude CodeClaude Desktop

Compatibility is declared by the source manifest. End-to-end runtime verification is coming, see below.

Preview Execution monitoring

We're building live execution health for every listing: tool-call success rate, median latency, uptime, and last-checked timestamps, measured, not self-reported. It isn't live yet, so we don't show numbers we can't stand behind.

How agent discovery & health will work →
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About

文献、序列与公共测序查询

推荐流程

  1. 明确查询对象：gene、protein、sequence accession、article、study、sample、run。
  2. 明确 ID 类型：gene symbol、Entrez ID、Ensembl ID、UniProt accession、RefSeq、SRA accession。
  3. 明确物种、日期范围、数据库和返回字段。
  4. 设计查询式：关键词、字段限定、布尔逻辑、分页或 history。
  5. 输出记录列表、metadata、下载清单或证据摘要。

交接物

database_family: literature-sequence
databases:
query_terms:
identifier_type:
species_or_taxon:
date_or_release:
return_fields:
output_format:
execution_entry:

禁止事项

  • 不要在同名基因未限定物种时直接返回结论。
  • 不要忽略 accession 版本号。
  • 文献证据要区分 review、preprint、primary research 和 database record。

Source & license

This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.

Install and usage instructions live in the source repository linked above.

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Versions

  • v0.1.0 Imported from the upstream source.

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