AgentStack
Browse Sign in
Browse Why AgentStack Sell Docs
Sign in
SKILL verified MIT Self-run

Bio Data Foundation

skill-onescience-ai-oneskills-data-foundation · by onescience-ai

生物信息数据基础设施范畴路由。用于序列文件、FASTQ 质控、BAM/CRAM/SAM、VCF/BCF/BED/GFF、公共数据下载接入、样本表和元数据设计等底层数据任务，选择具体 data-foundation skill 并生成交接物。

↗ Repository
— No reviews yet
0 installs
42 views
0.0% view→install

Install

$ agentstack add skill-onescience-ai-oneskills-data-foundation

✓ scanned · ✓ verified, works with Claude Code, Cursor, and more.

Security review

✓ Passed

No issues found. Passed automated security review. · v0.1.0 How review works →

  • ✓ Prompt-injection patterns
  • ✓ Secret / credential exfiltration
  • ✓ Dangerous shell & filesystem operations
  • ✓ Untrusted network calls
  • ✓ Known-malicious package signatures

What it can access

  • ✓ Network access No
  • ✓ Filesystem access No
  • ✓ Shell / process execution No
  • ✓ Environment & secrets No
  • ✓ Dynamic code execution No

From automated source analysis of v0.1.0. “Used” means the capability is present in the source — more access means more to trust, not that it’s unsafe.

View the full security report →

Verified badge

Passed review? Show it. Paste this badge into your README, it links to the public security report.

AgentStack Verified badge Links to your public security report.
[![AgentStack Verified](https://agentstack.voostack.com/badges/verified.svg)](https://agentstack.voostack.com/security/report/skill-onescience-ai-oneskills-data-foundation)

Reliability & compatibility

✓ Security review passed
0 installs to date
— no reviews yet
● 2mo ago

Declared compatibility

Claude CodeClaude Desktop

Compatibility is declared by the source manifest. End-to-end runtime verification is coming, see below.

Preview Execution monitoring

We're building live execution health for every listing: tool-call success rate, median latency, uptime, and last-checked timestamps, measured, not self-reported. It isn't live yet, so we don't show numbers we can't stand behind.

How agent discovery & health will work →
Are you the author of Bio Data Foundation? Claim this listing to set pricing, connect Stripe payouts, and keep 70% of every sale.
Sign up to claim

About

生信数据基础设施范畴路由

当用户任务主要是整理输入数据、解析文件格式、生成样本表、做基础 QC 或准备下游 workflow 输入时，使用本范畴。

具体 skill 路由

  • FASTA/FASTQ/GenBank/GFF、序列统计、反向互补、翻译、格式转换：读取 ./sequence-io-manipulation/SKILL.md
  • FASTQ 质量控制、adapter trimming、MultiQC：读取 ./read-qc-trimming/SKILL.md
  • SAM/BAM/CRAM、sort/index/filter、比对后 QC：读取 ./alignment-bam-processing/SKILL.md
  • VCF/BCF/BED/GTF/GFF、interval overlap、坐标系：读取 ./variant-interval-files/SKILL.md
  • GEO/SRA/ENA/公共 FASTQ 和矩阵接入：读取 ./public-data-ingestion/SKILL.md
  • samplesheet、metadata、contrast、batch、数据字典：读取 ./samplesheet-metadata-design/SKILL.md
  • count matrix、feature table、gene ID mapping、metadata join、sparse matrix、AnnData/loom/zarr 交接：读取 ./expression-matrix-feature-tables/SKILL.md

交接规则

输出时至少整理：

  • data_object
  • format
  • organism_or_taxon
  • reference_build
  • path_or_accession
  • validation_checks
  • downstream_workflow
  • execution_entry

Source & license

This open-source skill is cataloged on AgentStack and links to its original source — we do not rehost the code.

Install and usage instructions live in the source repository linked above.

Reviews

No reviews yet, be the first.

Write a review

Versions

  • v0.1.0 Imported from the upstream source.

More in Agent Skills